PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 487116
Common NameARALYDRAFT_487116
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family E2F/DP
Protein Properties Length: 390aa    MW: 42934.1 Da    PI: 6.3799
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
487116genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.52e-27104186271
  E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
              ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w+g
   487116 104 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfalpnndgtspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWRG 186
              689********...*****999*******************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.4E-1412389IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.102.6E-4699192IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.6E-35103186IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.4E-25105186IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.45E-21106187IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.39E-43191294IPR014889Transcription factor DP, C-terminal
SMARTSM011381.5E-68193348IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.56E-42193342No hitNo description
PfamPF087811.5E-42194311IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MTTGSNSNHN HHDDGSGRSN NNNNNPSTRS WGTAVSGQSV STSGSMGSPS SRSEQTITVA  60
TSASDSTFLR MNNLDIQGDD AGSQGASGIK KKKRGQRAAG PDKSGRGLRQ FSMKVCEKVE  120
SKGRTTYNEV ADELVAEFAL PNNDGTSPDQ QQYDEKNIRR RVYDALNVLM AMDIISKDKK  180
EIQWRGLPRT SLSDIEELKN ERLSLRNRIE KKTAYSQELE EQYVGLQNLI QRNEHLYSSG  240
NAPSGGVALP FILVQTRPHA TVEVEISEDM QLVHFDFNST PFELHDDNFV LKTMKFCDQP  300
PQQPNGHNNS QVVSHNFTPE NSNEGPSTGP APQADMYQSH LQQQQHQQHS QLQIIRTPET  360
NNVTSVADTG PVKSPSLPGI MNSSVKPEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-3797191193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2945320.0AJ294532.1 Arabidopsis thaliana mRNA for DP-like protein (dpb gene).
GenBankAK2281480.0AK228148.1 Arabidopsis thaliana mRNA for transcription factor - like protein, complete cds, clone: RAFL14-61-J08.
GenBankAY0860180.0AY086018.1 Arabidopsis thaliana clone 206791 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871032.10.0hypothetical protein ARALYDRAFT_487116
SwissprotQ9FNY20.0DPB_ARATH; Transcription factor-like protein DPB
TrEMBLD7LWN70.0D7LWN7_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.6__250__AT5G03415.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61392641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.10.0Transcription factor DP